Our Protocols
Growing MCF-10A cells
Growing iPSC cells
CRISPR/Cas13d gRNA Cloning Protocol
Our Plasmids
Plasmids for SR protein CASFx from Leclair et al. 2020
Plasmids for SRSF2, SRSF3, and SRFS7 overexpression or shRNA-mediated knockdown from Urbanski et al. 2022
Plasmids for SR protein overexpression from Anczukow et al. 2015
Our Code
Our Data Apps
Single cell atlas of mouse mammary gland aging from Angarola et al. Nature Aging 2024
A long-read RNA-sequencing atlas of human breast tumors from Veiga et al. Science Advances 2022
Our Datasets
- GSE216542 – scRNA-seq, snATAC-seq, and spatial transcriptomics data from mammary glands of young adult and aged female C57BL/6J mice from Angarola et al. 2024
- EGAS00001004819 – long read RNA-seq (Pacbio) and short read RNA-seq data from human breast tumors, PDX, and cell lines from Veiga et al. 2020 PMC8769553.
- GSE158578 – RNA-seq data from human iPSC differentiation into cardiomyocytes from Leclair et al. 2020 PMC7680420.
- GSE181956 – RNA-seq data from human HCC1806 breast cancer cells overexpressing splicing factors SRSF2-SRSF3-SRSF7 or MYC from Urbanski et al. 2022 PMC9731204
- GSE181968 – RNA-seq data from MCF-10A human mammary epithelial cells following MYC activation from Urbanski et al. 2022 PMC9731204
- GSE137408 – RNA-seq data from MDA-MB231 breast cancer cells with TRA2B knockdown from Park et al. 2019 PMC6936330
- GSE137440 – RNA-seq data from 3-D grown human mammary epithelial MCF-10A cells overexpressing SRSF2, SRSF4, SRSF6, SRSF9, TRA2B from Park et al. 2019 PMC6936330
- SRP062609 – RNA-seq data from 3-D and 2-D grown human mammary epithelial MCF-10A cells and HeLa cells overexpressing SRSF1 from Anczukow et al. 2015 PMC4597910